PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106900.4
Common NameB456_008G106900, LOC105763732
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 447aa    MW: 48637.6 Da    PI: 6.2898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106900.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.1e-15283328555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Gorai.008G106900.4 283 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 328
                         9************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.815278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-19281351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-18283337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-17283332No hitNo description
PfamPF000103.0E-13283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR  60
VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA  120
ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV  180
TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK  240
TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERKR RDKINQRMKT  300
LQKLVPNSSK TDKASMLDEV IEYLKQLQAQ VQMMNRMNLP SMMLQQQLQM SMMAPMGMGM  360
SVMDMNFMGR PNIIGISPVL SNPFMTMNTP WDGSNNNDRL QQAASMTDPL STFLACQSQP  420
MTMDAYSRMA AMYQQMQQPP ASSSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291ERKRRD
2287292RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.350.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487758560.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437518.10.0PREDICTED: transcription factor UNE10-like isoform X2
SwissprotQ8GZ381e-113UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D2RDA40.0A0A0D2RDA4_G
STRINGPOPTR_0002s14430.11e-171(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-102bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]